 AnalyzeMovie | AnalyzeMovie - Save analyze images to a kine-loop AVI |
| ColorMapsMake | colorMapsMake - Interactive color map maker |
| ColorMapsShow | colorMapsShow - display/select available Matlab colormaps |
| Contents | MRI_TOOLBOX v2.0 |
| CreateObjectMap | objectmap = CreateObjectMap ( height, width, depth ) |
| DTI | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| DTIguicode | |
| DTIvol | DTIVOL M-file for DTIvol.fig |
| DefaultObject | O = DefaultObject ( Name ) |
| LegendreP | function p=LegendreP(nmax,x) |
| LoadAVW | |
| LoadAVWObjectMap | objectmap = LoadAVWObjectMap ( Filename ) |
| NewObject | Index = NewObject ( objectmap, Name ) |
| PVC_eqW | Partial Volume Correction |
| Polyhedra | one of five regular polyhedra |
| RotateImage | RotateImage - Rotates an image by X degrees |
| Rotate_demo | rotate_demo - 3D rotation demo using rx,ry,rz |
| Rx | rx - Rotate 3D Cartesian coordinates around the X axis |
| Ry | ry - Rotate 3D Cartesian coordinates around the Y axis |
| Rz | rz - Rotate 3D Cartesian coordinates around the Z axis |
| SaveAVW | SaveAVW ( Filename, avw ) |
| SaveAVWObjectMap | SaveAVWObjectMap ( Filename, objectmap ) |
| avg_open | avg_open - function to handle various eeg_load commands |
| avw2brainstorm | avw2brainstorm - Convert Analyze struct into BrainStorm file |
| avw2ctf | mri = avw2ctf(avw) |
| avw2freesurfer_cor | avw2cor - converts an avw struct to FreeSurfer COR-* files |
| avw_bet | avw_bet |
| avw_binary | avw_binary - return 0 for avw.img <= thresh, 1 otherwise |
| avw_center | avw_center - find center of a volume |
| avw_center_mass | avw_center_mass - find center of mass for an image volume |
| avw_converter_script | avw_converter_script - convert byte order of .img files |
| avw_estimate_noise | |
| avw_flip | AVW_FLIP - ortho-flip Analyze data image (avw.img) |
| avw_hdr_check_datatype | avw_hdr_check_datatype - read Analyze format data header (*.hdr) |
| avw_hdr_make | AVW_HDR_MAKE - Create Analyze format data header (avw.hdr) |
| avw_hdr_read | avw_hdr_read - read Analyze format data header (*.hdr) |
| avw_hdr_write | AVW_HDR_WRITE - Write Analyze header file (*.hdr) |
| avw_histogram | avw_histogram |
| avw_homogeneity_correction | avw_homogeneity_correction - 2D correction of MRI RF nonuniformity |
| avw_img_compose | AVW_IMG_COMPOSE - Compose single slice Analyze files into a volume |
| avw_img_read | avw_img_read - read Analyze format data image (*.img) |
| avw_img_read_4d | avw_img_read - read Analyze format data image (*.img) |
| avw_img_write | avw_img_write - write Analyze image files (*.img) |
| avw_img_write_complex | avw_img_write - write Analyze image files (*.img) |
| avw_metric | AVW_METRIC - Convert image location from CRS to meters |
| avw_montage | |
| avw_paint | script to test vertex to voxel coordinate mapping |
| avw_poi | File/function name: poi.m (Pixels Of Interest) |
| avw_read | avw_read - read Analyze format data image (*.img) |
| avw_reslice | avw_reslice - Linear interpolation (using interp3) |
| avw_roi | avw_roi - extract a region of interest from avw.img |
| avw_shrinkwrap | avw_shrinkwrap - Tesselate the surface of a 3D Analyze 7.5 avw struct |
| avw_smooth | avw_smooth - Guassian smoothing |
| avw_stats | avw_stats - calculate region of interest stats for avw data |
| avw_view | avw_view - create and navigate ortho views of Analyze 7.5 volume |
| avw_view3 | AVW_VIEW3 - Create slices of Analyze file and overlay surface vertices |
| avw_view_hdr | AVW_VIEW_HDR - View and modify Analyze header file |
| avw_view_old | AVW_VIEW - Create and navigate ortho views of Analyze file |
| avw_view_test | AVW_VIEW: Create and navigate ortho views of Analyze file |
| avw_view_v5 | AVW_VIEW - Create and navigate ortho views of Analyze file |
| avw_write | avw_write - write Analyze files (*.img & *.hdr) |
| bioelectromagnetism_documentation | bioelectromagnetism_documentation - script to use m2html for documentation |
| bluehot | BLUEHOT make blue hot to red hot dual intensity colorscale |
| brainstormresults2freesurfer | brainstormresults2freesurfer - script to extract brainstorm inverse to freesurfer |
| brik2mgh | BRIK2MGH function to read 3D+time AFNI BRIK |
| cnt_open | cnt_open - function to handle various eeg_load commands |
| convert_erps2brainstorm | convert_erps2brainstorm - script to convert ascii to brainstorm ERP data |
| convert_mri2brainstorm | Script to convert freesurfer analyze files into brainstorm format |
| cor2avw | cor2avw - Read Freesurfer MRI data (COR-001 to COR-256) |
| cor_img_read | COR_IMG_READ - Read Freesurfer format data (COR-001 to COR-256) |
| coregister_fiducials | coregister_fiducials - Determine fiducial points coregistration |
| create_brainstormsubject | |
| create_mysqldb_freedriver | CREATE MySQL DATABASE for 'PTSDPET' study |
| crosshair | CROSSHAIR: A gui interface for reading (x,y) values from a plot. |
| crosshair_set | |
| crosshair_subplots | CROSSHAIR: A gui interface for reading (x,y) values from a plot. |
| eeg_Volt2uV | eeg_volt2uv - Convert volts to microvolts |
| eeg_amplitudearea | eeg_amplitudearea() - Resamples an ERP average using spline interpolation |
| eeg_amplitudearea2 | eeg_amplitudearea() - Resamples an ERP average using spline interpolation |
| eeg_anova_script | eeg_anova_script - example task ERP analysis |
| eeg_bad_channels | eeg_bad_channels - Calculate various indices of bad voltage channels |
| eeg_bad_channels_script | eeg_bad_channels_script - process files with eeg_bad_channels |
| eeg_baseline | eeg_baseline - remove mean of baseline period from all EEG epochs |
| eeg_colormap | eeg_colormap - generates EEG/ERP colormaps for eeg_toolbox |
| eeg_colormap_script | eeg_colormap_script - play with colour mapping |
| eeg_contour_levels | eeg_contour_levels - Defines contour levels relative to zero. |
| eeg_contour_script | eeg_contour_script - play with colour mapping |
| eeg_contours_engine | eeg_contours_engine - Generates contour/topographic maps |
| eeg_correlations | eeg_correlations - Pearsons correlations |
| eeg_crosshair | eeg_crosshair - A gui interface for reading (x,y) values from a plot. |
| eeg_diff_script | eeg_diff_script - calculate ERP difference waves |
| eeg_filter | eeg_filter - apply a butterworth polynomial filter |
| eeg_grand_mean_ascii_script | eeg_grand_mean_ascii_script - generate grand mean ERP |
| eeg_grand_mean_load_asc_script | eeg_grand_mean_load_asc_script - load grand mean ERPs |
| eeg_interp_scalp3D_test | eeg_interp_scalp3d_test - Script to test 3D interpolation of scalp potentials |
| eeg_interp_scalp_mesh | eeg_interp_scalp_mesh - Script to interpolate scalp potentials over mesh |
| eeg_interp_scalp_script | eeg_interp_scalp_script - Script to interpolate scalp potentials over mesh |
| eeg_interp_sph_spline | eeg_interp_sph_spline - Spherical Spline Interpolation of Potential |
| eeg_interp_sph_spline_c | eeg_interp_sph_spline_c - Spherical Spline Coefficients |
| eeg_interp_sph_spline_g | [Gx] = eeg_interp_sph_spline_g(COS) |
| eeg_interp_sph_spline_scd | eeg_interp_sph_spline_scd - Spherical Spline Scalp Current Density |
| eeg_interp_sph_spline_test | eeg_interp_sph_sline_test - script to test eeg_interp_sph_spline |
| eeg_lap2scd | eeg_lap2scd - scalp current density from Laplacian of scalp potential |
| eeg_lap2scd_script | eeg_lap2scd_script - load ERP Laplacian data and convert to SCD |
| eeg_lap_hjorth | eeg_lap_hjorth - 2D Laplacian of Potential at XY |
| eeg_lap_sph_spline | eeg_interp_sph_spline - Spherical Spline Laplacian of Potential |
| eeg_lap_test_script | eeg_lap_test_script - explore the vector calculus of scalp current density. |
| eeg_linfit | eeg_linfit - returns slope/intercept of linear fit |
| eeg_load | eeg_load - Load binary EEG data |
| eeg_load_ascii | eeg_load_ascii - Load ascii EEG data matrix |
| eeg_load_data_script | eeg_load_data_script - load ERP data |
| eeg_load_difdata_script | eeg_load_difdata_script - Script to load ERP difference waves |
| eeg_load_scan3_avg | eeg_load_scan3_avg - Read a NeuroScan 3.x AVG File |
| eeg_load_scan41 | eeg_load_scan4_avg - Load a Neuroscan 'scan4.1' average file |
| eeg_load_scan4_avg | eeg_load_scan4_avg - Load a Neuroscan 'scan4.x' average file |
| eeg_load_scan4_cnt | eeg_load_scan4_cnt - Load a scan4.1+ CNT file |
| eeg_load_scan4_cnt_data | eeg_load_scan4_cnt_data - Read Neuroscan 4.x Continuous EEG Data |
| eeg_load_scan4_cnt_event | eeg_load_scan4_cnt_event - Read Neuroscan 4.x Continuous EEG Events |
| eeg_load_scan_cnt | eeg_load_scan_cnt - Load continuous NeuroScan data. |
| eeg_load_scan_coh_asc | eeg_load_scan_coh_asc - Read a Scan coherence ascii file (*.dat) |
| eeg_load_scan_dat | eeg_load_scan_dat - Read Neuroscan .dat format |
| eeg_load_scan_eeg | eeg_load_scan_eeg - Load Neuroscan .EEG format |
| eeg_open | eeg_open - function to handle various eeg_load commands |
| eeg_peaks | eeg_peaks - Find peaks in EEG data |
| eeg_plot | eeg_plot - create a report style plot of ERP data |
| eeg_plot_metric | eeg_plot_metric - create TeX plot label (Y is uV, X is msec) |
| eeg_plot_surf | eeg_plot_surf - Plot a patch surface with voltage colourmap |
| eeg_plot_surf_contours | eeg_plot_surf_contours - plot 3D contours on triangulated surface |
| eeg_region_dif_peaks_script | eeg_region_dif_peaks_script - analyse regional ERP peaks |
| eeg_region_peaks | eeg_region_peaks - Find peaks in regions of electrodes |
| eeg_region_peaks_script | eeg_region_peaks_script - analyse regional ERP peaks |
| eeg_regress | eeg_regress - plot multiple linear regression results |
| eeg_save_graphics | eeg_save_graphics - Save figure as graphics file |
| eeg_scan_freq_parse_script | eeg_scan_freq_parse_script - generate Hz bands of Neuroscan AVG export file |
| eeg_toolbox | eeg_toolbox - Graphical user interface (GUI) to various EEG/ERP tools |
| eeg_toolbox_defaults | eeg_toolbox_defaults - Create, read, write eeg_toolbox defaults |
| eeg_toolbox_demo_script | script to plot an ERP and topographic map |
| eeg_toolbox_doc_make | eeg_toolbox_doc_make - script to use m2html to create eeg_toolbox documentation |
| eeg_toolbox_path | eeg_toolbox_path - locate the eeg_toolbox installation path |
| eeg_toolbox_recent | eeg_toolbox_recent - Keep track of eeg_toolbox .mat files |
| eeg_topo_murks_contour | eeg_topo_murks_contour - illustrate isocontours of a surface |
| eeg_topo_surface_script | eeg_topo_surface_script - explore surface interpolation/plots of ERP potentials |
| eeg_topo_surfacespline_script | eeg_topo_surfacespline_script - explore spline toolbox for topographic mapping |
| eeg_uV2Volt | eeg_uv2volt - Convert microvolts to volts |
| eeg_view_cnt | eeg_view_cnt - Plot scan CNT data |
| eeg_write | eeg_write - Write matrix of EEG data into binary file |
| eeg_write_ascii | eeg_write_ascii - Write matrix of EEG data into ascii data format |
| eeg_write_brainstorm | eeg_write_brainstorm - Write EEG data into brainstorm format |
| eeg_write_scan41 | eeg_write_scan41 - Write a Neuroscan 'scan4.1' average file |
| eeg_write_scan4_avg | eeg_write_scan4_avg - Write a Neuroscan 'scan4.x' average file |
| eegtoolbox_path | |
| elec_1020all_cart | elec_1020all_cart - all 10-20 electrode Cartesian coordinates |
| elec_1020select | elec_1020select - select 10-20 locations |
| elec_2d_3d | elec_2d_3d - Project 2D planar Cartesian coordinates into 3D elliptical shape |
| elec_3Dspace2brainstorm | elec_3dspace2brainstorm - Convert NeuroScan 3Dspace ascii to brainstorm file |
| elec_3d_2d | elec_3d_2d - Project Cartesian 3D coordinates to a 2D plane. |
| elec_cart2sph | elec_cart2sph - Convert Cartesian (X,Y,Z) to spherical (theta,phi,r) |
| elec_cm2m | elec_cm2m - Convert electrode coordinates from centimeters to meters |
| elec_coregister | fiducial_coregister - Determine fiducial points coregistration |
| elec_cosines | elec_cosines - Compute cosine of angle between electrode position vectors |
| elec_distance | elec_distance - Calculates spherical interelectrode distances (arc length). |
| elec_distance_bad | elec_distance_bad - identify electrodes that were poorly digitised |
| elec_distance_consec | elec_distance_consec - Identify distance between nearest neighbour electrodes |
| elec_distance_nn | elec_distance_nn - Identify distance between nearest neighbour electrodes. |
| elec_distance_testscript | elec_distance_testscript - test electrode distance calculations |
| elec_ellipse_fit | elec_ellipse_fit - Find radii of ellipse and elliptical points for XYZ |
| elec_ellipse_fit_optim | elec_ellipse_fit_optim - Optimization for elec_ellipse_fit.m |
| elec_ellipse_points | elec_ellipse_points - Generate points on an ellipse |
| elec_emse2matlab | elec_emse2matlab - Read an EMSE probe file (*.elp) |
| elec_fit_ellipse | elec_fit_ellipse - Find radii of ellipse and elliptical points for XYZ |
| elec_fit_ellipse_optim | elec_fit_ellipse_optim - Optimization for elec_fit_ellipse.m |
| elec_fit_sphere | elec_fit_sphere - find radius of sphere and closest spherical points to XYZ |
| elec_fit_sphere_optim | elec_fit_sphere_optim - Optimization for elec_fit_sphere.m |
| elec_load | elec_load - Read ascii electrode file |
| elec_load_brainstorm | elec_load_brainstorm - Load brainstorm Channel data into eeg_toolbox |
| elec_load_scan3ddasc | elec_load_scan_3ddasc - read ascii export of Neuroscan 3DD file |
| elec_load_scanTRI | ELEC_LOAD_SCANTRI - read sensor coordinates from Scan .tri files |
| elec_load_scan_3ddasc | elec_load_scan_3ddasc - read ascii export of Neuroscan 3DD file |
| elec_load_scan_tri | elec_load_scan_tri - read sensor coordinates from Scan .tri files |
| elec_load_testscript | elec_load_testscript - test loading and display of electrode data files |
| elec_meshplot | elec_meshplot - Plot a mesh and points for 3D electrode positions. |
| elec_open | elec_open - opens electrode data for the eeg_toolbox |
| elec_plot | elec_plot - plots electrode positions in 3D |
| elec_regions | elec_regions - Defines a structure of electrode regions |
| elec_sph2cart | elec_sph2cart - convert spherical to Cartesian coordinates |
| elec_sphere_fit | elec_sphere_fit - find radius of sphere and closest spherical points to XYZ |
| elec_sphere_fit_optim | elec_sphere_fit_optim - Optimization for elec_sphere_fit.m |
| elec_sphere_points | elec_sphere_points - Generate points on a hemisphere, radius R |
| elec_sphere_project | elec_sphere_project - calculates spherical projections of electrode positions |
| elec_sphere_refine | elec_sphere_refine - creates spherical vertices between input vertices |
| elec_write_3dspace | elec_write_3dspace - Write electrode coordinate file (ascii). |
| elec_write_brainstorm | elec_write_brainstorm - Write p.elec.data to brainstorm file |
| elec_write_emse | elec_write_emse - Write an EMSE probe file (*.elp) |
| emse_elec2mri | EMSE_ELEC2MRI - Convert point in head frame to mri coordinates |
| emse_mri2elec | EMSE_MRI2ELEC - Convert mri coordinates to points in head frame |
| emse_read_avg | emse_read_avg - Load EMSE .avg data (actually ascii format) |
| emse_read_elp | emse_read_elp - Read an EMSE probe file (*.elp) |
| emse_read_reg | emse_read_reg - Read EMSE/MRVU coregistration matrices |
| emse_read_wfr | emse_read_wfr - read EMSE wireframe (.wfr) |
| emse_write_wfr | emse_write_wfr - write mesh to EMSE wireframe (.wfr) |
| erp_open | avg_open - function to handle various eeg_load commands |
| erp_plot | gui_erp_plot - eeg_toolbox plot for ERP data |
| extractresults2freesurfer | Loop over all controls and patients |
| fiducial_coregister | fiducial_coregister - Determine fiducial points coregistration |
| freesurfer2ctf_fiducial_transform | |
| freesurfer_brain_correct | freesurfer_brain_correct - Correct intersections of brain/pial surfaces |
| freesurfer_cor2avw | freesurfer_cor2avw - Read Freesurfer MRI data (COR-001 to COR-256) |
| freesurfer_crs2xyz | |
| freesurfer_fread3 | freesurfer_fread3 - read a 3 byte integer out of a file |
| freesurfer_fwrite3 | freesurfer_fwrite3 - FreeSurfer function to write a 3 byte integer to a file |
| freesurfer_label2tal | freesurfer_label2tal - convert freesurfer label to Talairach coordinates |
| freesurfer_label2tal_test | |
| freesurfer_labels2annotation | freesurfer_labels2annotation(sname,hemi,label_file_list,annot_file) |
| freesurfer_meshtype | freesurfer_meshtype - get FreeSurfer mesh type from file name |
| freesurfer_plot_curv | freesurfer_plot_curv - create a patch surface colored by curvature |
| freesurfer_plot_scalar | freesurfer_plot_scalar |
| freesurfer_plot_surf | freesurfer_plot_surf |
| freesurfer_plot_thickness | freesurfer_plot_thickness |
| freesurfer_read_annotation | freesurfer_read_annotation - reads a binary annotation file into a vector |
| freesurfer_read_area | freesurfer_read_area - FreeSurfer I/O function to read an area file |
| freesurfer_read_ascii | freesurfer_read_ascii - Read FreeSurfer tesselation (.txt) |
| freesurfer_read_cor | |
| freesurfer_read_cor_gui | freesurfer_read_cor_gui - Load & Display FreeSurfer COR-??? data |
| freesurfer_read_curv | freesurfer_read_curv - FreeSurfer I/O function to read a curvature file |
| freesurfer_read_label | label = freesurfer_read_label(, lname) |
| freesurfer_read_subject | freesurfer_read_subject - Call functions to read subject surface data |
| freesurfer_read_sulc | freesurfer_read_sulc - FreeSurfer I/O function to read an sulc file |
| freesurfer_read_surf | freesurfer_read_surf - FreeSurfer I/O function to read a surface file |
| freesurfer_read_talxfm | freesurfer_read_talxfm - Read FreeSurfer talairach.xfm file |
| freesurfer_read_thickness | freesurfer_read_thickness - FreeSurfer I/O function to read a thickness file |
| freesurfer_read_tri | freesurfer_read_tri - Read FreeSurfer tesselation (.tri) |
| freesurfer_read_wfile | freesurfer_read_wfile - FreeSurfer I/O function to read an overlay (*.w) file |
| freesurfer_surf2ctf | freesurfer_surf2ctf - convert a freesurfer surface into CTF shape |
| freesurfer_surf2tal | freesurfer_surf2tal - convert freesurfer RAS to Talairach coordinates |
| freesurfer_surf2voxels | freesurfer_surf2voxels - convert a surface into MRI voxel coordinates |
| freesurfer_surf_combine | freesurfer_surf_combine - combine lh and rh surfaces |
| freesurfer_surf_interp | freesurfer_surf_interp |
| freesurfer_surf_separate | freesurfer_surf_separate - separate left and right hemi-surfaces |
| freesurfer_tools_path | freesurfer_tools_path - locate the freesurfer*.m installation path |
| freesurfer_voxels2surf | freesurfer_voxels2surf - convert voxel into surface coordinates |
| freesurfer_write_curv | freesurfer_write_curv - FreeSurfer I/O function to write a curvature file |
| freesurfer_write_label | freesurfer_write_label(, lname, label) |
| freesurfer_write_surf | freesurfer_write_surf - FreeSurfer I/O function to write a surface file |
| freesurfer_write_wfile | freesurfer_write_wfile - FreeSurfer I/O function to write an overlay (*.w) file |
| freesurfer_xyz2crs | |
| ge_hdr2avw | ge_hdr2avw - extract Analyze header from ge struct |
| ge_hdr_read | ge_hdr_read - Reads the header info from a GE LX2 or 5.X file |
| ge_series2avw | ge_series2avw - converts a GE series to Analyze |
| ge_series_read | ge_series_read - reads a volume of images from a GE series |
| geomview_read_off | geomview_read_off - Read GeomView .off mesh file format |
| getdicomsgui | extension=char(input('What extension do you use in your image files?\nPlease type between single quotes (case sensitive)\n')) |
| grayish | grayish - gray out the lower end of a spectrum for less severe palette |
| grow | |
| gui_avg_open | gui_avg_open - Load averaged ERP data into matlab workspace |
| gui_avw_open | gui_avw_open - Load & Display Analyze 7.5 data |
| gui_cnt_open | gui_cnt_open - Load a CNT data file into matlab workspace |
| gui_eeg_ascii_parameters | gui_eeg_ascii_parameters - Define EEG ascii parameters |
| gui_eeg_colormap | gui_eeg_colormap - display colormaps for eeg_toolbox |
| gui_eeg_contour_steps | gui_eeg_contour_steps - GUI for contour steps of topographic maps |
| gui_eeg_contours | gui_eeg_contours - GUI controls for topographic mapping of scalp potentials |
| gui_eeg_open | gui_eeg_open - Load an EEG data file into matlab workspace |
| gui_elec_open | gui_elec_open - Load an electrode data file into matlab workspace |
| gui_erf_open | gui_erf_open - Load averaged ERF data into matlab workspace |
| gui_erp_open | gui_erp_open - Load averaged ERP data into matlab workspace |
| gui_erp_plot | gui_erp_plot - eeg_toolbox plot for ERP data |
| gui_ge_open | gui_ge_open - Load & Display MRI data |
| gui_mesh_open | gui_mesh_open - GUI to mesh_open |
| gui_mesh_plot | gui_mesh_plot - GUI for plotting meshes |
| gui_mesh_save | GUI_MESH_OPEN: Load an emse mesh (wfr) file into matlab workspace |
| gui_mesh_write | gui_mesh_write - Save a mesh (triangulation) file |
| gui_mri_open | gui_mri_open - Load & Display an Analyze volume |
| gui_topo_animate | gui_topo_animate - GUI controls for animating topography |
| gui_updateparent | gui_updateparent - General GUI data handing for EEG Toolbox |
| interpolate_cortex | INTERPOLATE_CORTEX Interpolate current density from a sparse tesselation to a dense tesselation |
| load_AvgNetCDFv5 | load_AvgNetCDFv5 : reads a set of netMEG files, and returns the good data for the specified stimulus |
| mesh_3shell_script | mesh_3shell_script |
| mesh_bem_correct | mesh_bem_correct - Correct intersections of surfaces |
| mesh_bem_shells | mesh_bem_shells - Returns BEM scalp, skull and cortex meshes |
| mesh_bem_shells_script | mesh_bem_shells_script - create bem shells for N subjects |
| mesh_bet2matlab | mesh_bet2matlab - Read FSL BET tesselation (.coo/.dat) |
| mesh_center_mass | mesh_center_mass - find center of mass for a group of vertices |
| mesh_check | mesh_check - Check for mesh data in p struct |
| mesh_edges | mesh_edges - Calculate edge lengths of triangulation |
| mesh_emse2brainstorm | mesh_emse2brainstorm - Convert EMSE meshes (.wfr) to brainstorm format |
| mesh_emse2mat3d | mesh_emse2mat3d - Convert emse vertex/patches to matlab vertices/faces |
| mesh_emse2matlab | mesh_emse2matlab - Convert EMSE mesh (.wfr) to matlab format |
| mesh_face_area | mesh_face_area - Calculate face area |
| mesh_face_normals | mesh_face_normals - Calculate face surface normals |
| mesh_fit_elec | mesh_fit_elec - find mesh vertices nearest to electrodes |
| mesh_fit_elec_optim | mesh_fit_elec_optim - optimise the fitting of electrodes to scalp vertices |
| mesh_freesurfer2emse | mesh_freesurfer2emse - Convert FreeSurfer tesselation to EMSE |
| mesh_freesurfer2matlab | mesh_freesurfer2matlab - Read FreeSurfer tesselation (.txt) |
| mesh_freesurferTRI2matlab | mesh_freesurferTRI2matlab - Read FreeSurfer tesselation (.tri) |
| mesh_grow | mesh_grow - explode vertices of mesh by specific distance |
| mesh_laplacian | mesh_laplacian - Laplacian of irregular triangular mesh |
| mesh_laplacian_interp | mesh_laplacian_interp - Computes the zero Laplacian interpolation matrix |
| mesh_open | mesh_open - calls functions to read a triangulation file |
| mesh_plot | mesh_plot - plot a mesh from the p structure |
| mesh_refine | mesh_refine - creates smaller triangles from a triangle mesh |
| mesh_refine_tri4 | mesh_refine_tri4 - creates 4 triangle from each triangle of a mesh |
| mesh_refine_tri6 | mesh_refine_tri6 - creates 6 smaller triangles from a triangle mesh |
| mesh_scalp_interp | mesh_scalp_interp - Interpolates scalar over scalp mesh from electrodes |
| mesh_shrink | mesh_shrink - implode vertices of mesh by specific distance |
| mesh_shrinkwrap | mesh_shrinkwrap - Tesselate the surface of a 3D volume |
| mesh_shrinkwrap_old | |
| mesh_smooth | mesh_smooth - smooth vertices of a mesh |
| mesh_vertex_curvature | This function adapts Smith, S. (2002), Fast robust automated brain |
| mesh_vertex_distance | mesh_vertex_distance - Calculates spherical intervertex distances (arc length). |
| mesh_vertex_nearest | mesh_vertex_nearest - find nearest vertices to specified points |
| mesh_vertex_neighbours | mesh_vertex_neighbours - find all immediate neighbours of a vertex |
| mesh_vertex_normals | mesh_vertex_normals - Calculate vertex surface normals |
| mesh_vertex_normals_testscript | |
| mesh_vertex_smooth | [FV] = mesh_vertex_smooth(FV, index) |
| mesh_vertex_smooth_check | mesh_vertex_smooth_check(FV, index) |
| mesh_vertex_spacing | [FV] = mesh_vertex_spacing(FV) |
| mesh_write | mesh_write - a switch yard for several mesh writing functions |
| mesh_write_brainstorm | mesh_write_brainstorm - Save eeg toolbox meshes to brainstorm format |
| mesh_write_emse | mesh_write_emse - Save mesh to EMSE (.wfr) file |
| mesh_write_freesurfer | mesh_write_freesurfer - Save mesh to FreeSurfer (.asc) file |
| mesh_write_fs_curv | mesh_write_fs_curv - Save mesh CData to FreeSurfer curvature file |
| mesh_write_fs_overlay | mesh_write_fs_overlay - Save mesh CData to FreeSurfer overlay file |
| mesh_write_fs_surf | mesh_write_fs_surf - Save mesh to FreeSurfer (.asc) file |
| mni2tal | MNI2TAL - MNI to Talairach coordinates (best guess) |
| mni2tal_matrix | mni2tal_matrix - Talairach to MNI coordinates (best guess) |
| mouse_rotate | mouse_rotate - Left click to 3Drotate a matlab figure graphic |
| mri_open | mri_open - function to call various mri data tools |
| mri_scalp | mri_scalp - Find the scalp surface of an MRI volume |
| mri_scalp_mesh | MRI_SCALP_MESH: Find the scalp surface of an Analyze volume (avw) |
| mri_toolbox | mri_toolbox - Graphical user interface (GUI) to various MRI tools |
| mri_toolbox_defaults | mri_toolbox_defaults - Create, read, write mri_toolbox defaults |
| mri_toolbox_doc_make | mri_toolbox_doc_make - script to use m2html to create mri_toolbox documentation |
| mri_toolbox_recent | mri_toolbox_recent - Keep track of mri_toolbox .mat files |
| mri_updateparent | mri_updateparent - General GUI data handing for MRI Toolbox |
| mriphantom | MRIPHANTOM - simulated MRI of a Shepp Logan head phantom |
| nearpoints | |
| patch_swell | |
| pifft | PIFFT - Homodyne reconstruciton of partial MRI k-space (Spatial Frequency) data |
| plot3d | PLOT3D - produces an image of a 3D object |
| plot_get_lines | Get Line Data from Current Figure |
| plot_patch | PLOT_PATCH - plots a vertex or face and its neighbors |
| plots_loaddata | plots_loaddata - script to load and plot ERPs |
| plots_topography | plots_topography - script to plot ERP topo maps |
| plots_waveforms | plots_waveforms - script to plot/save ERP waveforms |
| progress_bar | progress_bar - Display a 'Progress Bar' |
| save_epsc | save_epsc - Save figure to EPS color file |
| save_jpg | save_jpg - Save figure to JPG file |
| save_pdf | save_pdf - Save figure to PDF color file |
| save_png | save_png - Save figure to PNG file |
| shrink | SHRINK - Removes outer zeros of a matrix. |
| siemens_ima_read | SIEMENS_IMA_READ - read Siemens .ima data file (*.ima) |
| solid_angle | BODYANG Body (solid) angle computation. |
| source_dipole_script | source dipole script |
| source_dipole_sphere | source_dipole_sphere - calculate surface potential on a sphere containing a dipole |
| source_monopole | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| sphere_bounded_script | |
| sphere_project | sphere_project - project point X,Y,Z to the surface of sphere radius r |
| sphere_tri | sphere_tri - generate a triangle mesh approximating a sphere |
| sphere_tri_testscript | script to test the sphere triangulation |
| suptitle | SUPTITLE Puts a title above all subplots. |
| suptitle_withpatch | SUPTITLE Puts a title above all subplots. |
| tal2mni | TAL2MNI - Talairach to MNI coordinates |
| tessellation_stats | TESSELLATION_STATS - Calculate statistics of the tesselation and hunt for suspicious faces and vertices |
| vector_magnitude | vector_magnitude - computes the magnitude of a 3D Cartesian vector |
| vector_unit | vector_unit - computes the unit vector of a 3D Cartesian vector |
| vertices_connectivity | |
Master index