MRI_TOOLBOX v2.0 Copyright (C) 2004 Darren Weber This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% avw_read - read Analyze format data image (*.img) avw_hdr_read - read Analyze format data header (*.hdr) avw_img_read - read Analyze format data image (*.img) avw_img_compose - compose Analyze volume from single slices avw_hdr_check_datatype - read Analyze format data header (*.hdr) avw_hdr_make - create Analyze format data header (avw.hdr) avw_write - write Analyze files (*.img & *.hdr) avw_hdr_write - write Analyze header file (*.hdr) avw_img_write - write Analyze image files (*.img) avw_view - create and navigate ortho views of Analyze 7.5 volume avw_view_hdr - view and modify Analyze header file avw_roi - extract a region of interest from avw.img avw_stats - calculate region of interest stats for avw data avw_metric - convert image location from CRS to meters avw_binary - return 0 for avw.img <= thresh, 1 otherwise avw_smooth - Guassian smoothing avw_center - find center of a volume avw_flip - ortho-flip Analyze data image (avw.img) avw2brainstorm - Convert Analyze struct into BrainStorm file avw2cor - converts an avw struct to FreeSurfer COR-* files cor2avw - Read Freesurfer MRI data (COR-001 to COR-256) cor_img_read - Read Freesurfer format data (COR-001 to COR-256) mni2tal - MNI to Talairach coordinates (best guess) mni2tal_matrix - Talairach to MNI coordinates (best guess) tal2mni - Talairach to MNI coordinates avw_converter_script - convert byte order of .img files avw_homogeneity_correction - 2D correction of MRI RF nonuniformity emse_elec2mri - convert point in head frame to mri coordinates emse_mri2elec - convert mri coordinates to points in head frame emse_open_reg - read EMSE/MRVU coregistration matrices ge_hdr2avw - extract Analyze header from ge struct ge_hdr_read - read the header info from a GE LX2 or 5.X file ge_series2avw - convert a GE series to Analyze ge_series_read - read a volume of images from a GE series ctf_write_mri - write a CTF .mri file ctf_make_mri - create a CTF mri struct with zero image ctf_read_mri - read a CTF .mri file gui_avw_open - Load & Display Analyze 7.5 data gui_cor_open - Load & Display FreeSurfer COR-??? data gui_ge_open - Load & Display MRI data gui_mri_open - Load & Display MRI data mri_open - function to call various mri data tools mri_toolbox_recent - Keep track of mri_toolbox .mat files mri_updateparent - General GUI data handing for MRI Toolbox